_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: e-114
 Query name: gi|291170270|gb|ADD82413.1| iodothyronine deiodinase type 2 [Chrysiptera cyanea]
 Query range: 1-271  (total 271)

 Target: /data/www-rg/seblastian_results/558487721/tempfiles/temptarget.fasta
 Chromosome: OMLM01007644.1:subseq_4912,103122_ Strand: -
 Positions:
 -Exon 1  52898        53122
 -Exon 2  49997        50584

 Redox box: no

Query   MGTAGEDLLVTLQILPGFFSNCLFLALYDSVVLLKRAVSLLSCSRSAGCGEWRRMLTSEGLRSIWNSFLLDAYKQ <---Intron---> VKLGCEAPN
        || | ||||||||||||||||||||||||||||/|| ||||||| ||  |||| ||||  ||||||||/|||||| <   2313bp   > |||||||||
Target  MGMASEDLLVTLQILPGFFSNCLFLALYDSVVLVKRVVSLLSCSSSAASGEWRPMLTSAALRSIWNSFILDAYKQ                VKLGCEAPN
        agagaggccgaccaccgtttatctcgttgtggcgacggtccattatggtggtccatatggcctataatacggtac                gacgtggca
        tgtcgaatttctattcgttcagtttctaacttttagttcttggcgccccgaggcttcccctgctgagtttacaaa                tatggacca
        gaggtgtgccacgagatctaccgcctgcccgggggctgggcccccccgcaggctggcagggcccgccccacacgg                aatctgaac
                                                                                                            

Query   SKVVKVPDGPRWSSAISSTTSVPCGAKIQNGDECRLLDFESSDRPLVVNFGSATUPPFISHLPAFRQLVEDFSDVADFVLVYIDEAHPSDGWVAPPMGSC
        ||||||||||  ||/ // |/|| ||/|||| ||||||||||||||||||||||||||||||||||/|||||||||||||||||||||||||||| ||||
Target  SKVVKVPDGPCCSSSPTNMTNVPPGARIQNGHECRLLDFESSDRPLVVNFGSATUPPFISHLPAFRELVEDFSDVADFVLVYIDEAHPSDGWVAPTMGSC
        taggagcggcttaaacaaaaagccggaacagcgtcccgtgttgcccggatgtgatcctaacccgtcgtgggtaggggtgtgtagggcctggtggcaagtt
        cattatcagcgggggccatcatccgcgtaagaaggttataccagctttatgcccgccttgatcctgattaatgatcattttataacaccaggtccctgcg
        cagggtttctccccttttgtttattcgcatgcgcctgttgaatccgggtccaccaccccccggtttggggctttgttcgagctcgtcactcggcttgcgc
                                                              *                                             

Query   SFSFRKHQNLEERMGAARKLIEHFSLPPQCQLVADCMDNNANVAYGVSNERVCIVQQRKVAYLGGKGPFFYSLKDVRQWLEQSYGRR
        ||| |||||||||/|||||||| |||||||||||||||||||||||||||||||||/||/|||||||||||/|||||||||||| /|
Target  SFSVRKHQNLEERLGAARKLIEKFSLPPQCQLVADCMDNNANVAYGVSNERVCIVQRRKIAYLGGKGPFFYNLKDVRQWLEQSYRKR
        ttagcaccacggacgggcacagattcccctccgggtagaagaggtggtagcgtagccaaagtcggagctttacaggcctcgcataac
        ctgtgaaaataagtgccgattaatctccagattcagtaaacatcagtcaagtgttaggatcatggagcttaataatgagtaagagag
        tccagacgcaggggagacgctgatcaaagtgggtccgccctcgttttttaggtaaagagcacgctagtttctggtgggggagccgag
                                                                                               
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 1998 ; UGA-SECIS: 2394

------- SECIS element -- id:1 -- grade:C ----
 Chromosome = OMLM01007644.1:subseq_4912,103122_ Strand = - Positions = 47998 - 47921
 Found by:  Infernal (score=17.19) Covels (score=23.52)
 Stem2 length = 7   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -12.21

         ..(((((((........(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(((([((........{[[[(((({{{(((..................)))}}}))))]]]}..--....))]))))..
 target  GUGGUGAAGGUGUAUAAUGAAAACCUUUGACGAAAGAGUCUCUGACUCAGUUUCUGGUUGGAUAG--UAAACUGCACCUA
                          ****           ^^^                        ****